Optimizing Aging & Health: Methods and Applications
Centre on Aging Colloquium Series, Fall 2014
The Centre on Aging (COAG) is a research intensive centre at the University of Victoria, with members engaged in aging research in its many forms, including both quantitative and qualitative methods, and longitudinal, experimental, and intervention designs. A key emphasis is on advances in the health, cognitive vitality, and well-being of an aging community. This colloquium series has been developed to highlight both substantive and methodological innovations and applications in aging research. This fall, our colloquium series emphasizes data management and statistical analysis using R software (http://www.r-project.org/) and statistical models for identifying trajectories and transitions in longitudinal studies and administrative health data. This fall series will be of general interest to researchers and students who wish to increase their expertise in statistical analysis using R.
Location: University of Victoria, Medical Sciences Building, Lecture Room 160
Broadcast: Sessions will also be available via live web streaming hosted by WestGrid. Web link for live stream available upon registration.
Online Registration (No fee): Be sure to register to receive up-to-date information on presentations, resources, live web streaming and Q & A participation!
Time for all sessions: 10:30 am to 12:00 pm PST
Materials: All accompanying project files are availible on GitHub
This series is hosted in partnership with the Department of Psychology, Education and Training Unit of Population Data BC, the Island Health Research and Capacity Building Program, and the Integrative Analysis of Longitudinal Studies of Aging (IALSA) Research Network (NIH/NIA 1P01AG043362).
Schedule of Events
- Tuesday, Oct 14, 2014 — Toolbox and Skillset of Reproducible Research (RR) — Andrey Koval (UVic)
- Tuesday, Oct 21, 2014 — RR Basic Skills (1): Data Manipulation — Andrey Koval
- Tuesday, Oct 28, 2014 — Introduction to Latent Class and Latent Transition Models: Matching Models to Questions to Data — Brian Flaherty (University of Washington)
- Tuesday, Nov 4, 2014 — RR Basic Skills (2): Graph Production — Andrey Koval
- Tuesday, Nov 11, 2014 — Remembrance Day — (No Session)
- Tuesday, Nov 18, 2014 — RR Basic Skills (3): Statistical Modeling — Andrey Koval
- Tuesday, Nov 25, 2014 — RR Basic Skills (4): Dynamic Reporting — Andrey Koval
- Tuesday, Dec 2, 2014 — Migrating into R from other Statistical Software — Andrey Koval
Lecture Summaries
Oct 10, 2014
Andrey Koval (University of Victoria)
Toolbox and Skillset of Reproducible Research
The lecture introduces reproducible research and demonstrates digital self-publishing with RStudio and Git (Hub). The skills described and emphasized in this workflow include data manipulation, graph production, statistical modeling, and dynamic reporting. A more elaborate discussion of each basic skill will be provided in the next four lectures.
watch online
Oct 21, 2014
Andrey Koval (University of Victoria)
RR Skills (1): Data Manipulation
The lecture introduces the reproducible project that will be demonstrated during the lecture series. Topics: import and exploration of the raw data, project organization, techniques and practices of cleaning data, organizing the data workflow, reshaping data.
watch online
Oct 28, 2014
Brian Flaherty (University of Washington)
Introduction to Latent Class and Latent Transition Models: Matching Models to Questions to Data.
Nov 4, 2014
Andrey Koval (University of Victoria)
RR Basic Skills (2): Graph Production
The lecture introduces the grammar of graphics and its implementation in R.
Topics: basic R graphic utility; producing basic graphs with ggplot2; graph tuning and preparing your graphs for publishing.
watch online
Nov 11, 2014
Remembrance Day
Nov 18, 2014
Andrey Koval (University of Victoria)
RR Basic Skills (3): Statistical modeling
The lecture introduces model fitting in R and discusses popular packages for estimating statistical models (nlme, lme4, etc.). Fitting of linear and mixed models of longitudinal data is demonstrated. The strategy of organizing and post-processing of the model output is discussed. watch online
Nov 25, 2014
The presentation has been rescheduled to next week, December 2. The lecture “Migrating into R from other Statistical Software” has been moved to the spring 2015 semester. This rescheduling will assist with better alignment of presentation topics and will address logistical considerations associated with instructor availability.
Dec 2, 2014
Andrey Koval (University of Victoria)
RR Basic Skills (4): Dynamic Reporting
The lecture introduces publishing with knitr and rmarkdown packages inside RStudio. A brief tutorial on markdown language will be provided as well as a demonstration on integrating R code into reports, and a discussion on the strategy of report production. Several output formats (pdf, html, slides) are considered.
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Join us
at the University of Victoria (MSB 160), to meet our excellent presenters in-person and to participate in Q&A sessions that follow each event.
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